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SRR12083665 Sample ID 281
| Paper identifier | Blumberg2021characterizing |
| SRP accession | SRP268709 |
| GEO accession | GSE153200 |
| Samples | SRR12083665 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 170 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 327 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | K562 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Previously in DB until 4/19/2021 as Blumberg2020unpublished - scripts have been changed, but all previous outerr and logs reflect previous ID |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 150 |
| Read depth after trimming | 47,228,404 |
| Duplication proportion | 0.14785 |
| Proportion reads mapped | 0.4661 |
| Exon/intron ratio | 2.51135 |
| Unique read proportion | 0.87834 |
| Total # Tfit bidirectionals | 17603 |
| # Promoter Tfit bidirectionals | 7116 |
| # Intronic Tfit bidirectionals | 7999 |
| # Intergenic Tfit bidirectionals | 1941 |
| Total # dREG bidirectionals | 7591 |
| # Promoter dREG bidirectionals | 3461 |
| # Intronic dREG bidirectionals | 2833 |
| # Intergenic dREG bidirectionals | 1130 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |