DBNascent | Samples

SRR12091783 Sample ID 2375

**Data sources**
Paper identifier	Stengel2020definition
SRP accession	SRP268831
GEO accession	GSE153267
Samples	SRR12091783

**Technical details**
QC score	3
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	Luciferase/GFP/NeoR
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	155 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Kasumi-1
Clone/Individual
Strain
Genotype	Aml1-ETO dTAG-inducible degron
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	GSK2879552 (100 nM)	-24 hr	0 hr	1 day
treatment	dTAG47 (500 nM)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	75
Read depth after trimming	71,067,415
Duplication proportion	0.65599
Proportion reads mapped	0.8939
Exon/intron ratio	3.29168
Unique read proportion	0.56966

**Bidirectionals**
Total # Tfit bidirectionals	39673
# Promoter Tfit bidirectionals	11301
# Intronic Tfit bidirectionals	18187
# Intergenic Tfit bidirectionals	9303
Total # dREG bidirectionals	36111
# Promoter dREG bidirectionals	10681
# Intronic dREG bidirectionals	15997
# Intergenic dREG bidirectionals	8954
Part of Tfit master merge?	True
Part of dREG master merge?	True