DBNascent | Samples

SRR12091784 Sample ID 2376

**Data sources**
Paper identifier	Stengel2020definition
SRP accession	SRP268831
GEO accession	GSE153267
Samples	SRR12091784

**Technical details**
QC score	4
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	Luciferase/GFP/NeoR
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	66 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	716 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Kasumi-1
Clone/Individual
Strain
Genotype	Aml1-ETO dTAG-inducible degron
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	GSK2879552 (100 nM)	-24 hr	0 hr	1 day
treatment	dTAG47 (500 nM)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	75
Read depth after trimming	70,116,749
Duplication proportion	0.89876
Proportion reads mapped	0.9468
Exon/intron ratio	2.25072
Unique read proportion	0.39669

**Bidirectionals**
Total # Tfit bidirectionals	16424
# Promoter Tfit bidirectionals	4114
# Intronic Tfit bidirectionals	8042
# Intergenic Tfit bidirectionals	3095
Total # dREG bidirectionals	16688
# Promoter dREG bidirectionals	7591
# Intronic dREG bidirectionals	6163
# Intergenic dREG bidirectionals	3157
Part of Tfit master merge?	True
Part of dREG master merge?	True