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SRR122339 Sample ID 2592
| Paper identifier | Wang2011reprogramming |
| SRP accession | SRP005967 |
| GEO accession | GSE27823 |
| Samples | SRR122339 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 41 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 927 Kb |
| dREG bidirectional regions | BED file | 290 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | LNCaP |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA control |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 36 |
| Read depth after trimming | 21,511,375 |
| Duplication proportion | 0.73458 |
| Proportion reads mapped | 0.6743 |
| Exon/intron ratio | 3.90494 |
| Unique read proportion | 0.27821 |
| Total # Tfit bidirectionals | 10715 |
| # Promoter Tfit bidirectionals | 5025 |
| # Intronic Tfit bidirectionals | 4145 |
| # Intergenic Tfit bidirectionals | 1037 |
| Total # dREG bidirectionals | 6744 |
| # Promoter dREG bidirectionals | 4170 |
| # Intronic dREG bidirectionals | 1769 |
| # Intergenic dREG bidirectionals | 906 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |