DBNascent | Samples

SRR122339 Sample ID 2592

**Data sources**
Paper identifier	Wang2011reprogramming
SRP accession	SRP005967
GEO accession	GSE27823
Samples	SRR122339

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	41 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	927 Kb
dREG bidirectional regions	BED file	290 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	36
Read depth after trimming	21,511,375
Duplication proportion	0.73458
Proportion reads mapped	0.6743
Exon/intron ratio	3.90494
Unique read proportion	0.27821

**Bidirectionals**
Total # Tfit bidirectionals	10715
# Promoter Tfit bidirectionals	5025
# Intronic Tfit bidirectionals	4145
# Intergenic Tfit bidirectionals	1037
Total # dREG bidirectionals	6744
# Promoter dREG bidirectionals	4170
# Intronic dREG bidirectionals	1769
# Intergenic dREG bidirectionals	906
Part of Tfit master merge?	True
Part of dREG master merge?	True