DBNascent | Samples

SRR122341 Sample ID 2593

**Data sources**
Paper identifier	Wang2011reprogramming
SRP	SRP005967
Samples	SRR122341

**Technical details**
QC score	3
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	46 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	974 Kb
dREG bidirectional regions	BED file	273 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA Foxa1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dihydrotestosterone	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	DHT concentration probably 100 nM, but not explicitly said
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	36
Read depth after trimming	20,727,546
Duplication proportion	0.65032
Proportion reads mapped	0.6942
Exon/intron ratio	2.68731
Unique read proportion	0.36089

**Bidirectionals**
Total # Tfit bidirectionals	11242
# Promoter Tfit bidirectionals	5353
# Intronic Tfit bidirectionals	4513
# Intergenic Tfit bidirectionals	1172
Total # dREG bidirectionals	6344
# Promoter dREG bidirectionals	3724
# Intronic dREG bidirectionals	1764
# Intergenic dREG bidirectionals	969
Part of Tfit master merge?	True
Part of dREG master merge?	True