DBNascent | Samples

SRR1224573 Sample ID 57

**Data sources**
Paper identifier	Allen2014global
SRP	SRP035278
Samples	SRR1224573

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	404 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	3 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	191,455,961
Duplication proportion	0.64257
Proportion reads mapped	0.8497
Exon/intron ratio	3.9271
Unique read proportion	0.61777

**Bidirectionals**
Total # Tfit bidirectionals	48411
# Promoter Tfit bidirectionals	16551
# Intronic Tfit bidirectionals	16534
# Intergenic Tfit bidirectionals	14306
Total # dREG bidirectionals	63240
# Promoter dREG bidirectionals	7707
# Intronic dREG bidirectionals	29969
# Intergenic dREG bidirectionals	22603
Part of Tfit master merge?	True
Part of dREG master merge?	True