DBNascent | Samples

SRR1224574 Sample ID 58

**Data sources**
Paper identifier	Allen2014global
SRP	SRP035278
Samples	SRR1224574

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	195 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	nutlin-3 (10 microM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	50
Read depth after trimming	164,646,421
Duplication proportion	0.83592
Proportion reads mapped	0.869
Exon/intron ratio	2.69469
Unique read proportion	0.63233

**Bidirectionals**
Total # Tfit bidirectionals	42457
# Promoter Tfit bidirectionals	16172
# Intronic Tfit bidirectionals	15586
# Intergenic Tfit bidirectionals	9660
Total # dREG bidirectionals	36878
# Promoter dREG bidirectionals	8535
# Intronic dREG bidirectionals	16153
# Intergenic dREG bidirectionals	10793
Part of Tfit master merge?	True
Part of dREG master merge?	True