DBNascent | Samples

SRR1233869 Sample ID 2378

**Data sources**
Paper identifier	Step2014antidiabetic
SRP	SRP041129
Samples	SRR1233869

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	245 Mb
Stranded gene read counts	TXT file	928 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	rosiglitazone (1 microM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	156,429,241
Duplication proportion	0.59054
Proportion reads mapped	0.6384
Exon/intron ratio	3.30166
Unique read proportion	0.54709

**Bidirectionals**
Total # Tfit bidirectionals	30569
# Promoter Tfit bidirectionals	10299
# Intronic Tfit bidirectionals	8533
# Intergenic Tfit bidirectionals	9254
Total # dREG bidirectionals	32098
# Promoter dREG bidirectionals	7260
# Intronic dREG bidirectionals	12814
# Intergenic dREG bidirectionals	10043
Part of Tfit master merge?	True
Part of dREG master merge?	True