DBNascent | Samples

SRR1233871 Sample ID 2380

**Data sources**
Paper identifier	Step2014antidiabetic
SRP	SRP041129
Samples	SRR1233871

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	228 Mb
Stranded gene read counts	TXT file	927 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	rosiglitazone (1 microM)	-3 hr	0 hr	3 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	153,198,314
Duplication proportion	0.59909
Proportion reads mapped	0.6248
Exon/intron ratio	3.4632
Unique read proportion	0.52058

**Bidirectionals**
Total # Tfit bidirectionals	27998
# Promoter Tfit bidirectionals	10732
# Intronic Tfit bidirectionals	7607
# Intergenic Tfit bidirectionals	7345
Total # dREG bidirectionals	28611
# Promoter dREG bidirectionals	7082
# Intronic dREG bidirectionals	11219
# Intergenic dREG bidirectionals	8405
Part of Tfit master merge?	True
Part of dREG master merge?	True