DBNascent | Samples

SRR1233872 Sample ID 2381

**Data sources**
Paper identifier	Step2014antidiabetic
SRP	SRP041129
Samples	SRR1233872

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	260 Mb
Stranded gene read counts	TXT file	934 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	197,132,427
Duplication proportion	0.68529
Proportion reads mapped	0.618
Exon/intron ratio	2.25749
Unique read proportion	0.64497

**Bidirectionals**
Total # Tfit bidirectionals	37811
# Promoter Tfit bidirectionals	11905
# Intronic Tfit bidirectionals	11404
# Intergenic Tfit bidirectionals	11765
Total # dREG bidirectionals	37667
# Promoter dREG bidirectionals	8165
# Intronic dREG bidirectionals	15329
# Intergenic dREG bidirectionals	12278
Part of Tfit master merge?	True
Part of dREG master merge?	True