DBNascent | Samples

SRR1233873 Sample ID 2382

**Data sources**
Paper identifier	Step2014antidiabetic
SRP	SRP041129
Samples	SRR1233873

**Technical details**
QC score	5
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	50 Mb
Stranded gene read counts	TXT file	928 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1012 Kb
dREG bidirectional regions	BED file	397 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	rosiglitazone (1 microM)	-10 min	0 min	10 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	50
Read depth after trimming	151,850,383
Duplication proportion	0.95378
Proportion reads mapped	0.6395
Exon/intron ratio	2.87193
Unique read proportion	0.27468

**Bidirectionals**
Total # Tfit bidirectionals	11619
# Promoter Tfit bidirectionals	4093
# Intronic Tfit bidirectionals	4147
# Intergenic Tfit bidirectionals	2089
Total # dREG bidirectionals	9240
# Promoter dREG bidirectionals	4571
# Intronic dREG bidirectionals	2447
# Intergenic dREG bidirectionals	1689
Part of Tfit master merge?	True
Part of dREG master merge?	True