DBNascent | Samples

SRR1233874 Sample ID 2384

**Data sources**
Paper identifier	Step2014antidiabetic
SRP accession	SRP041129
GEO accession	GSE56745
Samples	SRR1233874

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	145 Mb
Stranded gene read counts	TXT file	926 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1013 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	rosiglitazone (1 microM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	161,902,884
Duplication proportion	0.72268
Proportion reads mapped	0.491
Exon/intron ratio	3.17972
Unique read proportion	0.45645

**Bidirectionals**
Total # Tfit bidirectionals	25845
# Promoter Tfit bidirectionals	8024
# Intronic Tfit bidirectionals	8785
# Intergenic Tfit bidirectionals	5912
Total # dREG bidirectionals	23361
# Promoter dREG bidirectionals	6501
# Intronic dREG bidirectionals	8610
# Intergenic dREG bidirectionals	6100
Part of Tfit master merge?	True
Part of dREG master merge?	True