DBNascent | Samples

SRR1233876 Sample ID 2385

**Data sources**
Paper identifier	Step2014antidiabetic
SRP	SRP041129
Samples	SRR1233876

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	139 Mb
Stranded gene read counts	TXT file	926 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1023 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	rosiglitazone (1 microM)	-3 hr	0 hr	3 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	141,915,785
Duplication proportion	0.73576
Proportion reads mapped	0.5494
Exon/intron ratio	2.85223
Unique read proportion	0.48924

**Bidirectionals**
Total # Tfit bidirectionals	26414
# Promoter Tfit bidirectionals	10104
# Intronic Tfit bidirectionals	8048
# Intergenic Tfit bidirectionals	6012
Total # dREG bidirectionals	23518
# Promoter dREG bidirectionals	7189
# Intronic dREG bidirectionals	8683
# Intergenic dREG bidirectionals	6209
Part of Tfit master merge?	True
Part of dREG master merge?	True