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SRR1233876 Sample ID 2386
| Paper identifier | Step2014antidiabetic |
| SRP accession | SRP041129 |
| GEO accession | GSE56745 |
| Samples | SRR1233876 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 139 Mb |
| Stranded gene read counts | TXT file | 926 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1023 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | 3T3-L1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | rosiglitazone (1 microM) | -3 hr | 0 hr | 3 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 141,915,785 |
| Duplication proportion | 0.73576 |
| Proportion reads mapped | 0.5494 |
| Exon/intron ratio | 2.85223 |
| Unique read proportion | 0.48924 |
| Total # Tfit bidirectionals | 26414 |
| # Promoter Tfit bidirectionals | 10104 |
| # Intronic Tfit bidirectionals | 8048 |
| # Intergenic Tfit bidirectionals | 6012 |
| Total # dREG bidirectionals | 23518 |
| # Promoter dREG bidirectionals | 7189 |
| # Intronic dREG bidirectionals | 8683 |
| # Intergenic dREG bidirectionals | 6209 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |