DBNascent | Samples

SRR12482694 Sample ID 878

**Data sources**
Paper identifier	Gally2020gain
SRP accession	SRP278196
GEO accession	GSE156541
Samples	SRR12482694

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	373 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LC-2/ad
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	76
Read depth after trimming	138,443,380
Duplication proportion	0.55872
Proportion reads mapped	0.9499
Exon/intron ratio	3.96897
Unique read proportion	0.70571

**Bidirectionals**
Total # Tfit bidirectionals	48914
# Promoter Tfit bidirectionals	19662
# Intronic Tfit bidirectionals	15645
# Intergenic Tfit bidirectionals	13496
Total # dREG bidirectionals	47054
# Promoter dREG bidirectionals	8789
# Intronic dREG bidirectionals	20278
# Intergenic dREG bidirectionals	15813
Part of Tfit master merge?	True
Part of dREG master merge?	True