DBNascent | Samples

SRR12699334 Sample ID 2228

**Data sources**
Paper identifier	Schick2021acute
SRP accession	SRP255443
GEO accession	GSE148175
Samples	SRR12699334

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	260 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1006 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HAP1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Cites Jaeger2020selective, so might be random primed library, and might have Drosophila spike-ins
Analysis notes	Previously in DB until 4/19/2021 as Schick2020unpublished - scripts have been changed, but all previous outerr and log files reflect previous id

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	13
Read depth after trimming	68,236,282
Duplication proportion	0.32375
Proportion reads mapped	0.9811
Exon/intron ratio	3.18934
Unique read proportion	0.88362

**Bidirectionals**
Total # Tfit bidirectionals	32369
# Promoter Tfit bidirectionals	17112
# Intronic Tfit bidirectionals	10294
# Intergenic Tfit bidirectionals	5560
Total # dREG bidirectionals	22762
# Promoter dREG bidirectionals	7672
# Intronic dREG bidirectionals	9434
# Intergenic dREG bidirectionals	4596
Part of Tfit master merge?	True
Part of dREG master merge?	True