DBNascent | Samples

SRR1275489 Sample ID 2417

**Data sources**
Paper identifier	Tan2016stress
SRP accession	SRP041793
GEO accession	GSE57430
Samples	SRR1275489

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	11 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	29 Kb
dREG bidirectional regions	BED file	19 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A375
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-2 day	0 day	2 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Most sparse due to low complexity, but probably usable; Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	40
Read depth after trimming	11,048,933
Duplication proportion	0.94838
Proportion reads mapped	0.9587
Exon/intron ratio	0.72549
Unique read proportion	0.05299

**Bidirectionals**
Total # Tfit bidirectionals	330
# Promoter Tfit bidirectionals	142
# Intronic Tfit bidirectionals	89
# Intergenic Tfit bidirectionals	70
Total # dREG bidirectionals	426
# Promoter dREG bidirectionals	111
# Intronic dREG bidirectionals	69
# Intergenic dREG bidirectionals	239
Part of Tfit master merge?	True
Part of dREG master merge?	True