DBNascent | Samples

SRR1275490 Sample ID 2417

**Data sources**
Paper identifier	Tan2016stress
SRP	SRP041793
Samples	SRR1275490

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	14 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	107 Kb
dREG bidirectional regions	BED file	31 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A375
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-2 day	0 day	2 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Most sparse due to low complexity, but probably usable; Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	40
Read depth after trimming	12,343,429
Duplication proportion	0.92933
Proportion reads mapped	0.9519
Exon/intron ratio	1.00862
Unique read proportion	0.07416

**Bidirectionals**
Total # Tfit bidirectionals	1222
# Promoter Tfit bidirectionals	618
# Intronic Tfit bidirectionals	382
# Intergenic Tfit bidirectionals	188
Total # dREG bidirectionals	713
# Promoter dREG bidirectionals	331
# Intronic dREG bidirectionals	126
# Intergenic dREG bidirectionals	267
Part of Tfit master merge?	True
Part of dREG master merge?	True