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SRR1275491 Sample ID 2419
| Paper identifier | Tan2016stress |
| SRP accession | SRP041793 |
| GEO accession | GSE57430 |
| Samples | SRR1275491 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 15 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 125 Kb |
| dREG bidirectional regions | BED file | 41 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | A375 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | leflunomide (25 microM) | -2 day | 0 day | 2 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Most sparse due to low complexity, but probably usable; Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 40 |
| Read depth after trimming | 16,023,837 |
| Duplication proportion | 0.94036 |
| Proportion reads mapped | 0.9481 |
| Exon/intron ratio | 0.83226 |
| Unique read proportion | 0.06975 |
| Total # Tfit bidirectionals | 1451 |
| # Promoter Tfit bidirectionals | 737 |
| # Intronic Tfit bidirectionals | 438 |
| # Intergenic Tfit bidirectionals | 241 |
| Total # dREG bidirectionals | 962 |
| # Promoter dREG bidirectionals | 460 |
| # Intronic dREG bidirectionals | 197 |
| # Intergenic dREG bidirectionals | 317 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |