DBNascent | Samples

SRR1275494 Sample ID 2421

**Data sources**
Paper identifier	Tan2016stress
SRP	SRP041793
Samples	SRR1275494

**Technical details**
QC score	5
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	11 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	25 Kb
dREG bidirectional regions	BED file	21 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A375
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	A771726 (25 microM)	-2 day	0 day	2 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Most sparse due to low complexity, but probably usable; Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	40
Read depth after trimming	20,678,114
Duplication proportion	0.97308
Proportion reads mapped	0.9511
Exon/intron ratio	0.55249
Unique read proportion	0.04127

**Bidirectionals**
Total # Tfit bidirectionals	280
# Promoter Tfit bidirectionals	109
# Intronic Tfit bidirectionals	55
# Intergenic Tfit bidirectionals	92
Total # dREG bidirectionals	491
# Promoter dREG bidirectionals	108
# Intronic dREG bidirectionals	88
# Intergenic dREG bidirectionals	279
Part of Tfit master merge?	True
Part of dREG master merge?	True