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SRR12774949 Sample ID 2262
| Paper identifier | Shamie2020unpublished |
| SRP accession | SRP286414 |
| GEO accession | GSE159044 |
| Samples | SRR12774949 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | GRO-cap |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 99 Mb |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | C. griseus |
| Sample type | cell line |
| Cell type | CHO-K1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 5 |
| Raw read length | 76 |
| Read depth after trimming | 23,048,346 |
| Duplication proportion | 0.69364 |
| Proportion reads mapped | 0.9275 |
| Exon/intron ratio | 9.9284 |
| Unique read proportion | 0.38636 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |