DBNascent | Samples

SRR1297232 Sample ID 2648

**Data sources**
Paper identifier	Wei2016rbfox2
SRP	SRP042215
Samples	SRR1297232

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	88 Mb
Stranded gene read counts	TXT file	922 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	872 Kb
dREG bidirectional regions	BED file	532 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	cardiomyocyte
Clone/Individual
Strain	Black Swiss
Genotype	Rbfox2 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	9 week old mice
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	40
Read depth after trimming	37,378,102
Duplication proportion	0.57006
Proportion reads mapped	0.8662
Exon/intron ratio	3.32707
Unique read proportion	0.57571

**Bidirectionals**
Total # Tfit bidirectionals	10229
# Promoter Tfit bidirectionals	3382
# Intronic Tfit bidirectionals	3799
# Intergenic Tfit bidirectionals	1607
Total # dREG bidirectionals	12351
# Promoter dREG bidirectionals	4744
# Intronic dREG bidirectionals	3934
# Intergenic dREG bidirectionals	2461
Part of Tfit master merge?	True
Part of dREG master merge?	True