DBNascent | Samples

SRR1297235 Sample ID 2651

**Data sources**
Paper identifier	Wei2016rbfox2
SRP	SRP042215
Samples	SRR1297235

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	29 Mb
Stranded gene read counts	TXT file	906 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1002 Kb
dREG bidirectional regions	BED file	376 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain
Genotype
Construct	siRNA Rbfox2

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	40
Read depth after trimming	10,077,408
Duplication proportion	0.47255
Proportion reads mapped	0.6873
Exon/intron ratio	3.21017
Unique read proportion	0.51709

**Bidirectionals**
Total # Tfit bidirectionals	11870
# Promoter Tfit bidirectionals	5461
# Intronic Tfit bidirectionals	3950
# Intergenic Tfit bidirectionals	1500
Total # dREG bidirectionals	8750
# Promoter dREG bidirectionals	5157
# Intronic dREG bidirectionals	1846
# Intergenic dREG bidirectionals	1046
Part of Tfit master merge?	True
Part of dREG master merge?	True