DBNascent | Samples

SRR1297237 Sample ID 2654

**Data sources**
Paper identifier	Wei2016rbfox2
SRP accession	SRP042215
GEO accession	GSE57926
Samples	SRR1297237

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	33 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	440 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain
Genotype
Construct	siRNA Suz12

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	40
Read depth after trimming	12,242,521
Duplication proportion	0.49579
Proportion reads mapped	0.7321
Exon/intron ratio	3.29443
Unique read proportion	0.5006

**Bidirectionals**
Total # Tfit bidirectionals	12713
# Promoter Tfit bidirectionals	6001
# Intronic Tfit bidirectionals	4054
# Intergenic Tfit bidirectionals	1531
Total # dREG bidirectionals	10241
# Promoter dREG bidirectionals	5773
# Intronic dREG bidirectionals	2342
# Intergenic dREG bidirectionals	1268
Part of Tfit master merge?	True
Part of dREG master merge?	True