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SRR1302424 Sample ID 2303
| Paper identifier | Skowronskakrawczyk2014required |
| SRP accession | SRP042370 |
| GEO accession | GSE58009 |
| Samples | SRR1302424 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 101 Mb |
| Organism | R. norvegicus |
| Sample type | cell line |
| Cell type | GC pituitary cell |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA beta-catenin; siRNA Satb1 |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 48 |
| Read depth after trimming | 39,554,508 |
| Duplication proportion | 0.50738 |
| Proportion reads mapped | 0.8392 |
| Exon/intron ratio | 3.55429 |
| Unique read proportion | 0.58216 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |