DBNascent | Samples

SRR1302424 Sample ID 2303

**Data sources**
Paper identifier	Skowronskakrawczyk2014required
SRP accession	SRP042370
GEO accession	GSE58009
Samples	SRR1302424

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	101 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	R. norvegicus
Sample type	cell line
Cell type	GC pituitary cell
Clone/Individual
Strain
Genotype
Construct	siRNA beta-catenin; siRNA Satb1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	48
Read depth after trimming	39,554,508
Duplication proportion	0.50738
Proportion reads mapped	0.8392
Exon/intron ratio	3.55429
Unique read proportion	0.58216

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False