DBNascent | Samples

SRR13114370 Sample ID 2810

**Data sources**
Paper identifier	Zhang2021physiological
SRP accession	SRP293909
GEO accession	GSE162010
Samples	SRR13114370

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	36 Mb
Stranded gene read counts	TXT file	918 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	733 Kb
dREG bidirectional regions	BED file	227 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic B cell
Clone/Individual
Strain
Genotype	Aid -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Originally in db until 4/19/2021 as Zhang2021unpublished, all scripts changed but original outerr and logs reflect previous ID

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	151
Read depth after trimming	36,643,967
Duplication proportion	0.90531
Proportion reads mapped	0.7633
Exon/intron ratio	1.82254
Unique read proportion	0.19577

**Bidirectionals**
Total # Tfit bidirectionals	8286
# Promoter Tfit bidirectionals	2095
# Intronic Tfit bidirectionals	3607
# Intergenic Tfit bidirectionals	1388
Total # dREG bidirectionals	5255
# Promoter dREG bidirectionals	1604
# Intronic dREG bidirectionals	1994
# Intergenic dREG bidirectionals	1106
Part of Tfit master merge?	True
Part of dREG master merge?	True