DBNascent | Samples

SRR13114373 Sample ID 2813

**Data sources**
Paper identifier	Zhang2021physiological
SRP accession	SRP293909
GEO accession	GSE162010
Samples	SRR13114373

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	29 Mb
Stranded gene read counts	TXT file	914 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	692 Kb
dREG bidirectional regions	BED file	198 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic B cell
Clone/Individual
Strain
Genotype	Aid -/-; 3' IgH CBE -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Originally in db until 4/19/2021 as Zhang2021unpublished, all scripts changed but original outerr and logs reflect previous ID

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	151
Read depth after trimming	23,689,210
Duplication proportion	0.88821
Proportion reads mapped	0.7762
Exon/intron ratio	1.72781
Unique read proportion	0.17091

**Bidirectionals**
Total # Tfit bidirectionals	7843
# Promoter Tfit bidirectionals	2215
# Intronic Tfit bidirectionals	3444
# Intergenic Tfit bidirectionals	1148
Total # dREG bidirectionals	4576
# Promoter dREG bidirectionals	1548
# Intronic dREG bidirectionals	1731
# Intergenic dREG bidirectionals	862
Part of Tfit master merge?	True
Part of dREG master merge?	True