DBNascent | Samples

SRR13208368 Sample ID 941

**Data sources**
Paper identifier	Harman2021invivo
SRP accession	SRP296794
GEO accession	GSE162756
Samples	SRR13208368

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	69 Mb
Stranded gene read counts	TXT file	916 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	689 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	pro B cell
Clone/Individual
Strain
Genotype	Rag2 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Labeled GRO-seq, but no protocol details; labeled 12377 but no replicate details
Analysis notes	Previously in db until 4/19/2021 as Tagoh2020unpublished, scripts changed but all previous documentation reflects previous id

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	50
Read depth after trimming	30,228,500
Duplication proportion	0.34314
Proportion reads mapped	0.5591
Exon/intron ratio	2.8976
Unique read proportion	0.71449

**Bidirectionals**
Total # Tfit bidirectionals	25129
# Promoter Tfit bidirectionals	9386
# Intronic Tfit bidirectionals	9637
# Intergenic Tfit bidirectionals	3514
Total # dREG bidirectionals	15712
# Promoter dREG bidirectionals	5271
# Intronic dREG bidirectionals	6025
# Intergenic dREG bidirectionals	2466
Part of Tfit master merge?	True
Part of dREG master merge?	True