DBNascent | Samples

SRR13208369 Sample ID 942

**Data sources**
Paper identifier	Harman2021invivo
SRP accession	SRP296794
GEO accession	GSE162756
Samples	SRR13208369

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	61 Mb
Stranded gene read counts	TXT file	915 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	669 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	pro B cell
Clone/Individual
Strain
Genotype	Rag2 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Labeled GRO-seq, but no protocol details; labeled 12378 but no replicate details
Analysis notes	Previously in db until 4/19/2021 as Tagoh2020unpublished, scripts changed but all previous documentation reflects previous id

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	29,606,309
Duplication proportion	0.37412
Proportion reads mapped	0.5076
Exon/intron ratio	3.21948
Unique read proportion	0.67938

**Bidirectionals**
Total # Tfit bidirectionals	24546
# Promoter Tfit bidirectionals	9236
# Intronic Tfit bidirectionals	9254
# Intergenic Tfit bidirectionals	3291
Total # dREG bidirectionals	15266
# Promoter dREG bidirectionals	5300
# Intronic dREG bidirectionals	5756
# Intergenic dREG bidirectionals	2244
Part of Tfit master merge?	True
Part of dREG master merge?	True