DBNascent | Samples

SRR13632940 Sample ID 893

**Data sources**
Paper identifier	Gibson2016chemical
SRP	SRP064970
Samples	SRR13632940

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	71 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	767 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype	shRNA Parp1 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol	-40 min	0 min	40 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	43
Read depth after trimming	18,239,015
Duplication proportion	0.36533
Proportion reads mapped	0.8495
Exon/intron ratio	2.68173
Unique read proportion	0.66802

**Bidirectionals**
Total # Tfit bidirectionals	27905
# Promoter Tfit bidirectionals	11958
# Intronic Tfit bidirectionals	11108
# Intergenic Tfit bidirectionals	4558
Total # dREG bidirectionals	17699
# Promoter dREG bidirectionals	8759
# Intronic dREG bidirectionals	6229
# Intergenic dREG bidirectionals	2917
Part of Tfit master merge?	True
Part of dREG master merge?	True