DBNascent | Samples

SRR1406747 Sample ID 1178

**Data sources**
Paper identifier	Kaikkonen2014control
SRP	SRP033253
Samples	SRR1406747

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	50 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	487 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Pool of at least 3 individuals; passage 9
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	13,650,121
Duplication proportion	0.4876
Proportion reads mapped	0.9535
Exon/intron ratio	2.6
Unique read proportion	0.54628

**Bidirectionals**
Total # Tfit bidirectionals	18431
# Promoter Tfit bidirectionals	5644
# Intronic Tfit bidirectionals	8910
# Intergenic Tfit bidirectionals	3464
Total # dREG bidirectionals	11334
# Promoter dREG bidirectionals	5150
# Intronic dREG bidirectionals	4352
# Intergenic dREG bidirectionals	2111
Part of Tfit master merge?	True
Part of dREG master merge?	True