DBNascent | Samples

SRR1406748 Sample ID 1179

**Data sources**
Paper identifier	Kaikkonen2014control
SRP accession	SRP033253
GEO accession	GSE52642
Samples	SRR1406748

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	50 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	534 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	VEGF-A165 (50 ng/mL)	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Pool of at least 3 individuals; passage 9
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	15,530,647
Duplication proportion	0.53318
Proportion reads mapped	0.9384
Exon/intron ratio	2.79698
Unique read proportion	0.5054

**Bidirectionals**
Total # Tfit bidirectionals	18975
# Promoter Tfit bidirectionals	6620
# Intronic Tfit bidirectionals	8809
# Intergenic Tfit bidirectionals	3344
Total # dREG bidirectionals	12445
# Promoter dREG bidirectionals	6032
# Intronic dREG bidirectionals	4706
# Intergenic dREG bidirectionals	2025
Part of Tfit master merge?	True
Part of dREG master merge?	True