DBNascent | Samples

SRR1501092 Sample ID 1440

**Data sources**
Paper identifier	Leveille2015genome
SRP	SRP034626
Samples	SRR1501092

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	204 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Paper cites Wang2011 (circularization) but GEO says Core 2008 and describes ligation.
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	117,834,619
Duplication proportion	0.73119
Proportion reads mapped	0.9691
Exon/intron ratio	3.18527
Unique read proportion	0.41221

**Bidirectionals**
Total # Tfit bidirectionals	35642
# Promoter Tfit bidirectionals	15341
# Intronic Tfit bidirectionals	13641
# Intergenic Tfit bidirectionals	6513
Total # dREG bidirectionals	27062
# Promoter dREG bidirectionals	8652
# Intronic dREG bidirectionals	10824
# Intergenic dREG bidirectionals	6854
Part of Tfit master merge?	True
Part of dREG master merge?	True