DBNascent | Samples

SRR1501093 Sample ID 1441

**Data sources**
Paper identifier	Leveille2015genome
SRP	SRP034626
Samples	SRR1501093

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	196 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	nutlin-3 (8 microM)	-12 hr	0 hr	12 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Paper cites Wang2011 (circularization) but GEO says Core 2008 and describes ligation.
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	128,688,556
Duplication proportion	0.77798
Proportion reads mapped	0.9686
Exon/intron ratio	3.11463
Unique read proportion	0.43912

**Bidirectionals**
Total # Tfit bidirectionals	34134
# Promoter Tfit bidirectionals	12627
# Intronic Tfit bidirectionals	13498
# Intergenic Tfit bidirectionals	7058
Total # dREG bidirectionals	26165
# Promoter dREG bidirectionals	8171
# Intronic dREG bidirectionals	10504
# Intergenic dREG bidirectionals	6774
Part of Tfit master merge?	True
Part of dREG master merge?	True