DBNascent | Samples

SRR1503602 Sample ID 865

**Data sources**
Paper identifier	Fuda2015gaga
SRP accession	SRP043988
GEO accession	GSE58955
Samples	SRR1503602

**Technical details**
QC score	5
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	25 Mb
Stranded gene read counts	TXT file	710 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file	687 Kb
dREG bidirectional regions	BED file	151 Kb
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	cell line
Cell type	S2
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	3
Raw read length	43
Read depth after trimming	5,166,303
Duplication proportion	0.44148
Proportion reads mapped	0.4753
Exon/intron ratio	1.10354
Unique read proportion	0.41725

**Bidirectionals**
Total # Tfit bidirectionals	6521
# Promoter Tfit bidirectionals	2068
# Intronic Tfit bidirectionals	1003
# Intergenic Tfit bidirectionals	483
Total # dREG bidirectionals	3583
# Promoter dREG bidirectionals	1157
# Intronic dREG bidirectionals	699
# Intergenic dREG bidirectionals	313
Part of Tfit master merge?	False
Part of dREG master merge?	False