DBNascent | Samples

SRR1503603 Sample ID 866

**Data sources**
Paper identifier	Fuda2015gaga
SRP accession	SRP043988
GEO accession	GSE58955
Samples	SRR1503603

**Technical details**
QC score	5
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	19 Mb
Stranded gene read counts	TXT file	708 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file	597 Kb
dREG bidirectional regions	BED file	110 Kb
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	cell line
Cell type	S2
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	3
Raw read length	43
Read depth after trimming	3,590,984
Duplication proportion	0.43688
Proportion reads mapped	0.4576
Exon/intron ratio	0.98075
Unique read proportion	0.37709

**Bidirectionals**
Total # Tfit bidirectionals	5660
# Promoter Tfit bidirectionals	1763
# Intronic Tfit bidirectionals	880
# Intergenic Tfit bidirectionals	338
Total # dREG bidirectionals	2604
# Promoter dREG bidirectionals	921
# Intronic dREG bidirectionals	500
# Intergenic dREG bidirectionals	245
Part of Tfit master merge?	False
Part of dREG master merge?	False