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SRR1503603 Sample ID 866
| Paper identifier | Fuda2015gaga |
| SRP accession | SRP043988 |
| GEO accession | GSE58955 |
| Samples | SRR1503603 |
| QC score | 5 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 19 Mb |
| Stranded gene read counts | TXT file | 708 Kb |
| Tfit bidirectional regions | BED file | 597 Kb |
| dREG bidirectional regions | BED file | 110 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | cell line |
| Cell type | S2 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 5 |
| Sample NRO score | 3 |
| Raw read length | 43 |
| Read depth after trimming | 3,590,984 |
| Duplication proportion | 0.43688 |
| Proportion reads mapped | 0.4576 |
| Exon/intron ratio | 0.98075 |
| Unique read proportion | 0.37709 |
| Total # Tfit bidirectionals | 5660 |
| # Promoter Tfit bidirectionals | 1763 |
| # Intronic Tfit bidirectionals | 880 |
| # Intergenic Tfit bidirectionals | 338 |
| Total # dREG bidirectionals | 2604 |
| # Promoter dREG bidirectionals | 921 |
| # Intronic dREG bidirectionals | 500 |
| # Intergenic dREG bidirectionals | 245 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |