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SRR1503604 Sample ID 867
| Paper identifier | Fuda2015gaga |
| SRP accession | SRP043988 |
| GEO accession | GSE58955 |
| Samples | SRR1503604 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 34 Mb |
| Stranded gene read counts | TXT file | 715 Kb |
| Tfit bidirectional regions | BED file | 749 Kb |
| dREG bidirectional regions | BED file | 228 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | cell line |
| Cell type | S2 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | dsRNA LacZ (10 microg/mL) | -5 day | 0 day | 5 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 4 |
| Raw read length | 59 |
| Read depth after trimming | 7,866,303 |
| Duplication proportion | 0.39903 |
| Proportion reads mapped | 0.5149 |
| Exon/intron ratio | 1.16348 |
| Unique read proportion | 0.49408 |
| Total # Tfit bidirectionals | 7178 |
| # Promoter Tfit bidirectionals | 2147 |
| # Intronic Tfit bidirectionals | 1233 |
| # Intergenic Tfit bidirectionals | 601 |
| Total # dREG bidirectionals | 5380 |
| # Promoter dREG bidirectionals | 1219 |
| # Intronic dREG bidirectionals | 1195 |
| # Intergenic dREG bidirectionals | 822 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |