DBNascent | Samples

SRR1503604 Sample ID 867

**Data sources**
Paper identifier	Fuda2015gaga
SRP accession	SRP043988
GEO accession	GSE58955
Samples	SRR1503604

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	34 Mb
Stranded gene read counts	TXT file	715 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file	749 Kb
dREG bidirectional regions	BED file	228 Kb
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	cell line
Cell type	S2
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dsRNA LacZ (10 microg/mL)	-5 day	0 day	5 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	4
Raw read length	59
Read depth after trimming	7,866,303
Duplication proportion	0.39903
Proportion reads mapped	0.5149
Exon/intron ratio	1.16348
Unique read proportion	0.49408

**Bidirectionals**
Total # Tfit bidirectionals	7178
# Promoter Tfit bidirectionals	2147
# Intronic Tfit bidirectionals	1233
# Intergenic Tfit bidirectionals	601
Total # dREG bidirectionals	5380
# Promoter dREG bidirectionals	1219
# Intronic dREG bidirectionals	1195
# Intergenic dREG bidirectionals	822
Part of Tfit master merge?	False
Part of dREG master merge?	False