DBNascent | Samples

SRR1503605 Sample ID 868

**Data sources**
Paper identifier	Fuda2015gaga
SRP accession	SRP043988
GEO accession	GSE58955
Samples	SRR1503605

**Technical details**
QC score	5
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	18 Mb
Stranded gene read counts	TXT file	707 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file	581 Kb
dREG bidirectional regions	BED file	116 Kb
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	cell line
Cell type	S2
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dsRNA LacZ (10 microg/mL)	-5 day	0 day	5 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	3
Raw read length	59
Read depth after trimming	2,456,593
Duplication proportion	0.31632
Proportion reads mapped	0.5113
Exon/intron ratio	1.22272
Unique read proportion	0.44669

**Bidirectionals**
Total # Tfit bidirectionals	5437
# Promoter Tfit bidirectionals	1640
# Intronic Tfit bidirectionals	811
# Intergenic Tfit bidirectionals	330
Total # dREG bidirectionals	2747
# Promoter dREG bidirectionals	910
# Intronic dREG bidirectionals	619
# Intergenic dREG bidirectionals	395
Part of Tfit master merge?	False
Part of dREG master merge?	False