DBNascent | Samples

SRR1503606 Sample ID 869

**Data sources**
Paper identifier	Fuda2015gaga
SRP accession	SRP043988
GEO accession	GSE58955
Samples	SRR1503606

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	31 Mb
Stranded gene read counts	TXT file	713 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file	745 Kb
dREG bidirectional regions	BED file	181 Kb
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	cell line
Cell type	S2
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dsRNA Gaf (10 microg/mL)	-5 day	0 day	5 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	4
Raw read length	43
Read depth after trimming	7,773,803
Duplication proportion	0.51887
Proportion reads mapped	0.5242
Exon/intron ratio	0.93233
Unique read proportion	0.39601

**Bidirectionals**
Total # Tfit bidirectionals	7134
# Promoter Tfit bidirectionals	2209
# Intronic Tfit bidirectionals	1196
# Intergenic Tfit bidirectionals	652
Total # dREG bidirectionals	4288
# Promoter dREG bidirectionals	1072
# Intronic dREG bidirectionals	823
# Intergenic dREG bidirectionals	399
Part of Tfit master merge?	False
Part of dREG master merge?	False