DBNascent | Samples

SRR1503607 Sample ID 870

**Data sources**
Paper identifier	Fuda2015gaga
SRP accession	SRP043988
GEO accession	GSE58955
Samples	SRR1503607

**Technical details**
QC score	5
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	27 Mb
Stranded gene read counts	TXT file	713 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file	693 Kb
dREG bidirectional regions	BED file	163 Kb
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	cell line
Cell type	S2
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dsRNA Gaf (10 microg/mL)	-5 day	0 day	5 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	3
Raw read length	43
Read depth after trimming	6,980,322
Duplication proportion	0.53238
Proportion reads mapped	0.5671
Exon/intron ratio	0.95637
Unique read proportion	0.37625

**Bidirectionals**
Total # Tfit bidirectionals	6585
# Promoter Tfit bidirectionals	2046
# Intronic Tfit bidirectionals	1031
# Intergenic Tfit bidirectionals	503
Total # dREG bidirectionals	3852
# Promoter dREG bidirectionals	1086
# Intronic dREG bidirectionals	750
# Intergenic dREG bidirectionals	371
Part of Tfit master merge?	False
Part of dREG master merge?	False