DBNascent | Samples

SRR1517780 Sample ID 752

**Data sources**
Paper identifier	Fang2014circadian
SRP accession	SRP044381
GEO accession	GSE59486
Samples	SRR1517780

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	69 Mb
Stranded gene read counts	TXT file	917 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	846 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	light cycle	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	12 hour light/dark cycle; ZT1
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	50
Read depth after trimming	48,898,132
Duplication proportion	0.47372
Proportion reads mapped	0.3949
Exon/intron ratio	3.11226
Unique read proportion	0.58058

**Bidirectionals**
Total # Tfit bidirectionals	17649
# Promoter Tfit bidirectionals	6378
# Intronic Tfit bidirectionals	6070
# Intergenic Tfit bidirectionals	3627
Total # dREG bidirectionals	19620
# Promoter dREG bidirectionals	8150
# Intronic dREG bidirectionals	6506
# Intergenic dREG bidirectionals	3774
Part of Tfit master merge?	True
Part of dREG master merge?	True