DBNascent | Samples

SRR1517788 Sample ID 760

**Data sources**
Paper identifier	Fang2014circadian
SRP accession	SRP044381
GEO accession	GSE59486
Samples	SRR1517788

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	88 Mb
Stranded gene read counts	TXT file	920 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	902 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	light cycle	-10 hr	0 hr	10 hr

**Extended notes**
Pipeline info and software versions
Sample notes	12 hour light/dark cycle; ZT10
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	78,688,309
Duplication proportion	0.5205
Proportion reads mapped	0.3594
Exon/intron ratio	2.9705
Unique read proportion	0.56759

**Bidirectionals**
Total # Tfit bidirectionals	17438
# Promoter Tfit bidirectionals	6551
# Intronic Tfit bidirectionals	6004
# Intergenic Tfit bidirectionals	3324
Total # dREG bidirectionals	20849
# Promoter dREG bidirectionals	7952
# Intronic dREG bidirectionals	7550
# Intergenic dREG bidirectionals	3953
Part of Tfit master merge?	True
Part of dREG master merge?	True