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SRR1517788 Sample ID 760
| Paper identifier | Fang2014circadian |
| SRP accession | SRP044381 |
| GEO accession | GSE59486 |
| Samples | SRR1517788 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 88 Mb |
| Stranded gene read counts | TXT file | 920 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 902 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | liver |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | light cycle | -10 hr | 0 hr | 10 hr |
| Pipeline info and software versions | |
| Sample notes | 12 hour light/dark cycle; ZT10 |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 78,688,309 |
| Duplication proportion | 0.5205 |
| Proportion reads mapped | 0.3594 |
| Exon/intron ratio | 2.9705 |
| Unique read proportion | 0.56759 |
| Total # Tfit bidirectionals | 17438 |
| # Promoter Tfit bidirectionals | 6551 |
| # Intronic Tfit bidirectionals | 6004 |
| # Intergenic Tfit bidirectionals | 3324 |
| Total # dREG bidirectionals | 20849 |
| # Promoter dREG bidirectionals | 7952 |
| # Intronic dREG bidirectionals | 7550 |
| # Intergenic dREG bidirectionals | 3953 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |