DBNascent | Samples

SRR1517789 Sample ID 761

**Data sources**
Paper identifier	Fang2014circadian
SRP	SRP044381
Samples	SRR1517789

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	99 Mb
Stranded gene read counts	TXT file	922 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	light cycle	-22 hr	-10 hr	12 hr

**Extended notes**
Pipeline info and software versions
Sample notes	12 hour light/dark cycle; ZT22
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	85,716,263
Duplication proportion	0.52296
Proportion reads mapped	0.3813
Exon/intron ratio	2.86899
Unique read proportion	0.57448

**Bidirectionals**
Total # Tfit bidirectionals	19264
# Promoter Tfit bidirectionals	7153
# Intronic Tfit bidirectionals	6395
# Intergenic Tfit bidirectionals	4218
Total # dREG bidirectionals	23837
# Promoter dREG bidirectionals	8395
# Intronic dREG bidirectionals	8755
# Intergenic dREG bidirectionals	5109
Part of Tfit master merge?	True
Part of dREG master merge?	True