DBNascent | Samples

SRR1517791 Sample ID 763

**Data sources**
Paper identifier	Fang2014circadian
SRP accession	SRP044381
GEO accession	GSE59486
Samples	SRR1517791

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	108 Mb
Stranded gene read counts	TXT file	921 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	966 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6
Genotype	Rev-erb-alpha -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	light cycle	-10 hr	0 hr	10 hr

**Extended notes**
Pipeline info and software versions
Sample notes	12 hour light/dark cycle; ZT10
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	50
Read depth after trimming	68,707,329
Duplication proportion	0.45972
Proportion reads mapped	0.4694
Exon/intron ratio	2.77621
Unique read proportion	0.6251

**Bidirectionals**
Total # Tfit bidirectionals	18006
# Promoter Tfit bidirectionals	6816
# Intronic Tfit bidirectionals	5943
# Intergenic Tfit bidirectionals	3763
Total # dREG bidirectionals	22359
# Promoter dREG bidirectionals	7762
# Intronic dREG bidirectionals	8111
# Intergenic dREG bidirectionals	4944
Part of Tfit master merge?	True
Part of dREG master merge?	True