DBNascent | Samples

SRR1542321 Sample ID 1611

**Data sources**
Paper identifier	Liu2014enhancer
SRP	SRP045391
Samples	SRR1542321

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	41 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	508 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	50
Read depth after trimming	48,133,914
Duplication proportion	0.90263
Proportion reads mapped	0.8512
Exon/intron ratio	5.96247
Unique read proportion	0.15577

**Bidirectionals**
Total # Tfit bidirectionals	16468
# Promoter Tfit bidirectionals	8300
# Intronic Tfit bidirectionals	6160
# Intergenic Tfit bidirectionals	1258
Total # dREG bidirectionals	11779
# Promoter dREG bidirectionals	6719
# Intronic dREG bidirectionals	3531
# Intergenic dREG bidirectionals	1113
Part of Tfit master merge?	True
Part of dREG master merge?	True