DBNascent | Samples

SRR1542322 Sample ID 1613

**Data sources**
Paper identifier	Liu2014enhancer
SRP accession	SRP045391
GEO accession	GSE60271
Samples	SRR1542322

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	33 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	413 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA Gata3

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	50
Read depth after trimming	42,084,318
Duplication proportion	0.92139
Proportion reads mapped	0.9418
Exon/intron ratio	5.67381
Unique read proportion	0.13283

**Bidirectionals**
Total # Tfit bidirectionals	12622
# Promoter Tfit bidirectionals	6349
# Intronic Tfit bidirectionals	4658
# Intergenic Tfit bidirectionals	878
Total # dREG bidirectionals	9602
# Promoter dREG bidirectionals	6194
# Intronic dREG bidirectionals	2645
# Intergenic dREG bidirectionals	884
Part of Tfit master merge?	True
Part of dREG master merge?	True