DBNascent | Samples

SRR1542324 Sample ID 1614

**Data sources**
Paper identifier	Liu2014enhancer
SRP	SRP045391
Samples	SRR1542324

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	118 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	897 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	shRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Vehicle may have been EtOH - not well specified
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	50,112,957
Duplication proportion	0.5935
Proportion reads mapped	0.9158
Exon/intron ratio	3.80724
Unique read proportion	0.44764

**Bidirectionals**
Total # Tfit bidirectionals	24506
# Promoter Tfit bidirectionals	11828
# Intronic Tfit bidirectionals	9489
# Intergenic Tfit bidirectionals	3660
Total # dREG bidirectionals	20597
# Promoter dREG bidirectionals	8651
# Intronic dREG bidirectionals	8390
# Intergenic dREG bidirectionals	3530
Part of Tfit master merge?	True
Part of dREG master merge?	True