DBNascent | Samples

SRR1542328 Sample ID 1618

**Data sources**
Paper identifier	Liu2014enhancer
SRP	SRP045391
Samples	SRR1542328

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	63 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	602 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	shRNA RAR-alpha/RAR-gamma

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	retinoic acid (1 microM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	22,855,043
Duplication proportion	0.5763
Proportion reads mapped	0.8958
Exon/intron ratio	3.64536
Unique read proportion	0.44127

**Bidirectionals**
Total # Tfit bidirectionals	18271
# Promoter Tfit bidirectionals	8704
# Intronic Tfit bidirectionals	7343
# Intergenic Tfit bidirectionals	2279
Total # dREG bidirectionals	13949
# Promoter dREG bidirectionals	7641
# Intronic dREG bidirectionals	4877
# Intergenic dREG bidirectionals	1827
Part of Tfit master merge?	True
Part of dREG master merge?	True