DBNascent | Samples

SRR1544605 Sample ID 1958

**Data sources**
Paper identifier	Nojima2015mammalian
SRP	SRP045447
Samples	SRR1544605

**Technical details**
QC score	2
Replicate	1
Protocol	NET-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	215 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	mNET-seq with CMA603 PolII antibody
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	5
Raw read length	51
Read depth after trimming	89,593,011
Duplication proportion	0.63794
Proportion reads mapped	0.8897
Exon/intron ratio	19.9759
Unique read proportion	0.39114

**Bidirectionals**
Total # Tfit bidirectionals	36575
# Promoter Tfit bidirectionals	14413
# Intronic Tfit bidirectionals	13712
# Intergenic Tfit bidirectionals	5851
Total # dREG bidirectionals	29899
# Promoter dREG bidirectionals	7504
# Intronic dREG bidirectionals	14096
# Intergenic dREG bidirectionals	6476
Part of Tfit master merge?	False
Part of dREG master merge?	False