DBNascent | Samples

SRR1544606 Sample ID 1960

**Data sources**
Paper identifier	Nojima2015mammalian
SRP accession	SRP045447
GEO accession	GSE60358
Samples	SRR1544606

**Technical details**
QC score	2
Replicate	1
Protocol	NET-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	253 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	mNET-seq with CMA601 PolII antibody
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	4
Raw read length	51
Read depth after trimming	90,272,217
Duplication proportion	0.53014
Proportion reads mapped	0.9293
Exon/intron ratio	7.25725
Unique read proportion	0.49771

**Bidirectionals**
Total # Tfit bidirectionals	43723
# Promoter Tfit bidirectionals	17824
# Intronic Tfit bidirectionals	16492
# Intergenic Tfit bidirectionals	9344
Total # dREG bidirectionals	38805
# Promoter dREG bidirectionals	8262
# Intronic dREG bidirectionals	17702
# Intergenic dREG bidirectionals	11141
Part of Tfit master merge?	False
Part of dREG master merge?	False