DBNascent | Samples

SRR1544608 Sample ID 1960

**Data sources**
Paper identifier	Nojima2015mammalian
SRP	SRP045447
Samples	SRR1544608

**Technical details**
QC score	1
Replicate	1
Protocol	NET-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	232 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct	siRNA luciferase

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	mNET-seq with CMA602 PolII antibody
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	3
Raw read length	51
Read depth after trimming	73,602,240
Duplication proportion	0.49126
Proportion reads mapped	0.873
Exon/intron ratio	6.20314
Unique read proportion	0.52531

**Bidirectionals**
Total # Tfit bidirectionals	29357
# Promoter Tfit bidirectionals	11982
# Intronic Tfit bidirectionals	11776
# Intergenic Tfit bidirectionals	4023
Total # dREG bidirectionals	27872
# Promoter dREG bidirectionals	6553
# Intronic dREG bidirectionals	12605
# Intergenic dREG bidirectionals	7003
Part of Tfit master merge?	False
Part of dREG master merge?	False